Bibliography Report

Author
Affiliation

Rainer M. Krug

Abstract

Reports analysing the IPBES Libraries on Zotero.

Introduction

This report assesses the APA Bibliography in regards to different measures and shows some information of the content. It does not assess the content of the sources but rather the bibliometric data.

Bibliographic analysis

In most cases, the bibliographic analysis is done on the OpenAlex library. In some cases, we can also do it using the Zenodo data. This is mentioned in the beginning of each subsection

Publication types

Analysis: Zenodo and OpenAlex

OpenAlex and Zotero use different tyoes. These are not directly compable, which is whu=y both are shown.

Show the code
bib_data$figure_types_data |>
  dplyr::arrange(
    from,
    desc(count)
  ) |>
  knitr::kable(
    caption = "Types of documents from the Zotero bibliography as well as from OpenApex."
  )
Types of documents from the Zotero bibliography as well as from OpenApex.
type count from
article 1584 OpenAlex
review 135 OpenAlex
book-chapter 20 OpenAlex
letter 8 OpenAlex
book 5 OpenAlex
erratum 2 OpenAlex
editorial 1 OpenAlex
paratext 1 OpenAlex
preprint 1 OpenAlex
report 1 OpenAlex
journalArticle 2633 Zotero
book 734 Zotero
report 455 Zotero
bookSection 201 Zotero
manuscript 88 Zotero
conferencePaper 47 Zotero
thesis 2 Zotero
Show the code
bib_data$figure_types

Zenodo versus OpenAlex Types

Analysis: Zenodo and OpenAlex

The types entered in the Zenodo library and the types as retrieved from OpenAlex are not linked, therefore they can differ. This can indicate faulty data entering in Zenodo but not necessarily has to. These cases need to be carefully evaluated and here only given as a starting point.

NA in OpenAlex is likely caused by the doi not found in OpenAlex (not in there, not valid, non-standard DOI in Zenodo). NA in Zotero is linked to non-standard DOI entries (i.e. with http) which can therefore not be linked to OpenAlex data. If all DOIs are in standard format, there should be no NAs in this Table in the column Ferom Zenodo.

TODO: Improvements should be done after feedback.

Show the code
bib_data$metrics$types$comparison |>
  knitr::kable(
    col.names = c("Type from Zenodo", "Type from [OpenAlex](https://OpenAlex.org){target='_blank'}", "count"),
    caption = "Table giving the combination of types from Zenodo as well as [OpenAlex](https://OpenAlex.org){target='_blank'} and their frequency"
  )
Table giving the combination of types from Zenodo as well as OpenAlex and their frequency
Type from Zenodo Type from OpenAlex count
journalArticle article 1463
journalArticle NA 1104
book NA 734
report NA 455
NA article 219
bookSection NA 201
journalArticle review 138
manuscript NA 88
conferencePaper NA 47
journalArticle book-chapter 13
NA book-chapter 11
journalArticle letter 8
NA review 6
journalArticle book 4
thesis NA 2
journalArticle erratum 2
journalArticle preprint 1
journalArticle editorial 1
NA paratext 1
NA book 1
NA report 1

Year of Publication

Analysis: Zenodo and OpenAlex

The following ranges of publication years can be found in the data.

Show the code
bib_data$figure_pub_year_data |>
  dplyr::summarize(
    min = min(publication_year, na.rm = TRUE),
    max = max(publication_year, na.rm = TRUE),
    .by = c(from)
  ) |>
  knitr::kable()
from min max
Zenodo 1935 2019
OpenAlex 1952 2019
Show the code
bib_data$figure_pub_year
Warning: Removed 1 row containing missing values or values outside the scale range
(`geom_col()`).

Access Status of References

Analysis: OpenAlex

Show the code
bib_data$figure_oa_status

50 Most often cited Journals

Analysis: Zenodo

TODO: OpenAlex should be added

Show the code
bib_data$figure_top_journals

This table contains all Journals as specified in the Zotero database.

Show the code
bib_data$figure_top_journals_data |>
  IPBES.R::table_dt("cited_journals")

Coutries of Institutes of all authors

Analysis: OpenAlex

In this section we will take a closer look at the countries from which ih the authors ot the publication come. THe data includes all authoirs without weighting.

Show the code
#|
#| fig-height: 10
#| fig-width: 10

bib_data$figure_top_country_map

This plot only contains the countries with more than 10 references.

Show the code
#|
#| fig-height: 10
#| fig-width: 10

bib_data$figure_top_country

This table contains all countries and the number of authorship.

Show the code
bib_data$figure_top_country_data |>
  IPBES.R::table_dt("top_countries")

Cleanliness of the Bibliography

Cleanliness of a bibliography is defined here as the quality of the bibliografic data in the bibliography. It does not concern any topical measures, only measures related to the bibliografic data in the bibliography.

The analysis is at the moment only done for DOIs as corresponding measures are not available at the moment for ISBNs and ISSNs and duplicate ISBNs and ISSNs can be rcorrect as different chapters of a book might be in the bibliography.

Entries with DOIs, ISBNs or ISSNs in Zotero

To identify a reference, the most widely used identifier is the DOI. The following table shows the number of references with a DOI and the number of unique DOIs.

To consider duplicate ISBNs or ISSNs as duplicates entries in the library is not waranted as e.g. differenc chapters of a book can be separate entries in the library and therefore lead to duplicates.

  • DOIs: 1872 (45%) - 150 duplicates
  • ISBNss: 369 (8.87%)
  • ISBNss: 2001 (48.1%)

DOIs in Zotero

The following sections provide some more detailed analysis of the bibliography in Zenodo. The tables all contain clickable links which, shwen clicked, show the respective article in the Zotero bibliograpohy.

Duplicates

The following DOIs are duplicates in the bibliography. This table should be empty.

Show the code
if (length(bib_data$metrics$zotero_dois$duplicate) > 0) {
  data.frame(
    doi = bib_data$metrics$zotero_dois$duplicate,
    link = paste0(bib_data$bibliography$url, "/items/", names(bib_data$metrics$zotero_dois$duplicate))
  ) |>
    dplyr::mutate(
      sort = doi,
      doi = paste0('<a href="', link, '" target="_blank">', doi, "</a>"),
    ) |>
    dplyr::arrange(
      sort
    ) |>
    dplyr::mutate(
      sort = NULL
    ) |>
    knitr::kable(
      caption = "DOIs in Zenodo which are duplicated",
      escape = FALSE
    )
}
DOIs in Zenodo which are duplicated
doi link
VUA4XP9H 10.1111/j.1365-2664.2008.01565.x https://www.zotero.org/groups/2333075/items/VUA4XP9H
SEB65DQI 10.1111/j.1365-2664.2008.01565.x https://www.zotero.org/groups/2333075/items/SEB65DQI
GJDTEJ94 10.1002/app5.13 https://www.zotero.org/groups/2333075/items/GJDTEJ94
GE7YEYIB 10.1002/app5.13 https://www.zotero.org/groups/2333075/items/GE7YEYIB
UNEDH3TW 10.1002/app5.147 https://www.zotero.org/groups/2333075/items/UNEDH3TW
ZDJSX8P3 10.1002/app5.147 https://www.zotero.org/groups/2333075/items/ZDJSX8P3
DVT286XG 10.1007/978-3-319-44037-8_6 https://www.zotero.org/groups/2333075/items/DVT286XG
554W93TZ 10.1007/978-3-319-44037-8_6 https://www.zotero.org/groups/2333075/items/554W93TZ
BQQCCDH7 10.1007/978-3-319-44037-8_6 https://www.zotero.org/groups/2333075/items/BQQCCDH7
DDLCA99W 10.1007/BF00052720 https://www.zotero.org/groups/2333075/items/DDLCA99W
YQKKS7MK 10.1007/BF00052720 https://www.zotero.org/groups/2333075/items/YQKKS7MK
GTULGPMW 10.1007/BF00052720 https://www.zotero.org/groups/2333075/items/GTULGPMW
GV9MT7GA 10.1007/BF00133748 https://www.zotero.org/groups/2333075/items/GV9MT7GA
DTDLMWI8 10.1007/BF00133748 https://www.zotero.org/groups/2333075/items/DTDLMWI8
Q533UEYD 10.1007/BF00133748 https://www.zotero.org/groups/2333075/items/Q533UEYD
M7MLPRI3 10.1007/BF00133748 https://www.zotero.org/groups/2333075/items/M7MLPRI3
AJDRDYHQ 10.1007/s00227-016-2912-0 https://www.zotero.org/groups/2333075/items/AJDRDYHQ
3MDUZ5V3 10.1007/s00227-016-2912-0 https://www.zotero.org/groups/2333075/items/3MDUZ5V3
BVHHQLIK 10.1007/s00267-012-9828-3 https://www.zotero.org/groups/2333075/items/BVHHQLIK
5MZTQA3S 10.1007/s00267-012-9828-3 https://www.zotero.org/groups/2333075/items/5MZTQA3S
X7NC3ES3 10.1007/s10531-009-9607-5 https://www.zotero.org/groups/2333075/items/X7NC3ES3
KJY3QQJL 10.1007/s10531-009-9607-5 https://www.zotero.org/groups/2333075/items/KJY3QQJL
VP7EMAXY 10.1007/s10745-009-9250-5 https://www.zotero.org/groups/2333075/items/VP7EMAXY
MU7B9C7G 10.1007/s10745-009-9250-5 https://www.zotero.org/groups/2333075/items/MU7B9C7G
JCS7EP25 10.1007/s11355-010-0145-9 https://www.zotero.org/groups/2333075/items/JCS7EP25
7LYMXL6W 10.1007/s11355-010-0145-9 https://www.zotero.org/groups/2333075/items/7LYMXL6W
6TMRFKWQ 10.1007/s11442-016-1337-5 https://www.zotero.org/groups/2333075/items/6TMRFKWQ
N22WWEC3 10.1007/s11442-016-1337-5 https://www.zotero.org/groups/2333075/items/N22WWEC3
RQVSNJSN 10.1016/0308-597X(96)00028-0 https://www.zotero.org/groups/2333075/items/RQVSNJSN
4AULLFEM 10.1016/0308-597X(96)00028-0 https://www.zotero.org/groups/2333075/items/4AULLFEM
TWBFJG24 10.1016/S0954-349X(01)00029-7 https://www.zotero.org/groups/2333075/items/TWBFJG24
H8WEYQKF 10.1016/S0954-349X(01)00029-7 https://www.zotero.org/groups/2333075/items/H8WEYQKF
4F92MHHH 10.1016/S0964-5691(02)00111-4 https://www.zotero.org/groups/2333075/items/4F92MHHH
GHH7RJP9 10.1016/S0964-5691(02)00111-4 https://www.zotero.org/groups/2333075/items/GHH7RJP9
6MP9FEXG 10.1016/S0964-5691(02)00111-4 https://www.zotero.org/groups/2333075/items/6MP9FEXG
SJ7UKFRZ 10.1016/S0964-5691(98)00042-8 https://www.zotero.org/groups/2333075/items/SJ7UKFRZ
9N6AFV4F 10.1016/S0964-5691(98)00042-8 https://www.zotero.org/groups/2333075/items/9N6AFV4F
YXMT3NI4 10.1016/S0964-5691(98)00042-8 https://www.zotero.org/groups/2333075/items/YXMT3NI4
CV2NFFHP 10.1016/j.atmosenv.2014.07.043 https://www.zotero.org/groups/2333075/items/CV2NFFHP
RAG68XE8 10.1016/j.atmosenv.2014.07.043 https://www.zotero.org/groups/2333075/items/RAG68XE8
MTKY2LQW 10.1016/j.biocon.2007.08.008 https://www.zotero.org/groups/2333075/items/MTKY2LQW
ID2RDUS6 10.1016/j.biocon.2007.08.008 https://www.zotero.org/groups/2333075/items/ID2RDUS6
8R3GDGUD 10.1016/j.biocon.2010.01.024 https://www.zotero.org/groups/2333075/items/8R3GDGUD
E3BL5UFI 10.1016/j.biocon.2010.01.024 https://www.zotero.org/groups/2333075/items/E3BL5UFI
VRSK8E29 10.1016/j.cities.2013.02.001 https://www.zotero.org/groups/2333075/items/VRSK8E29
YWDH6R2I 10.1016/j.cities.2013.02.001 https://www.zotero.org/groups/2333075/items/YWDH6R2I
J94NJS4Z 10.1016/j.cosust.2013.11.031 https://www.zotero.org/groups/2333075/items/J94NJS4Z
MJ5AISK2 10.1016/j.cosust.2013.11.031 https://www.zotero.org/groups/2333075/items/MJ5AISK2
HIHWIV9E 10.1016/j.cosust.2016.12.006 https://www.zotero.org/groups/2333075/items/HIHWIV9E
SEE3WWRJ 10.1016/j.cosust.2016.12.006 https://www.zotero.org/groups/2333075/items/SEE3WWRJ
VT5EUT3I 10.1016/j.cosust.2016.12.006 https://www.zotero.org/groups/2333075/items/VT5EUT3I
NNU68K2A 10.1016/j.cosust.2016.12.006 https://www.zotero.org/groups/2333075/items/NNU68K2A
C67ZUJKC 10.1016/j.ecocom.2010.02.001 https://www.zotero.org/groups/2333075/items/C67ZUJKC
XPYTD6YZ 10.1016/j.ecocom.2010.02.001 https://www.zotero.org/groups/2333075/items/XPYTD6YZ
7WVYYT6S 10.1016/j.ecoser.2014.12.012 https://www.zotero.org/groups/2333075/items/7WVYYT6S
Q9DGPFXE 10.1016/j.ecoser.2014.12.012 https://www.zotero.org/groups/2333075/items/Q9DGPFXE
829HFVHF 10.1016/j.ecoser.2015.05.002 https://www.zotero.org/groups/2333075/items/829HFVHF
Y8N6SDXR 10.1016/j.ecoser.2015.05.002 https://www.zotero.org/groups/2333075/items/Y8N6SDXR
8CG94MP3 10.1016/j.envsci.2012.02.007 https://www.zotero.org/groups/2333075/items/8CG94MP3
LPESWEUW 10.1016/j.envsci.2012.02.007 https://www.zotero.org/groups/2333075/items/LPESWEUW
I2X5HZU6 10.1016/j.envsci.2014.01.010 https://www.zotero.org/groups/2333075/items/I2X5HZU6
CTUFRUIM 10.1016/j.envsci.2014.01.010 https://www.zotero.org/groups/2333075/items/CTUFRUIM
C887992S 10.1016/j.jembe.2011.07.023 https://www.zotero.org/groups/2333075/items/C887992S
DIQVVWYJ 10.1016/j.jembe.2011.07.023 https://www.zotero.org/groups/2333075/items/DIQVVWYJ
4UMVUT65 10.1016/j.jenvman.2011.03.010 https://www.zotero.org/groups/2333075/items/4UMVUT65
EA4XNDLL 10.1016/j.jenvman.2011.03.010 https://www.zotero.org/groups/2333075/items/EA4XNDLL
9UWIDPM7 10.1016/j.jenvman.2011.03.010 https://www.zotero.org/groups/2333075/items/9UWIDPM7
6BTXRK7E 10.1016/j.jenvman.2014.11.002 https://www.zotero.org/groups/2333075/items/6BTXRK7E
HIVXXBMB 10.1016/j.jenvman.2014.11.002 https://www.zotero.org/groups/2333075/items/HIVXXBMB
7L9BG8V5 10.1016/j.jhydrol.2012.07.023 https://www.zotero.org/groups/2333075/items/7L9BG8V5
95ENXDTE 10.1016/j.jhydrol.2012.07.023 https://www.zotero.org/groups/2333075/items/95ENXDTE
D3AGN246 10.1016/j.landurbplan.2010.12.013 https://www.zotero.org/groups/2333075/items/D3AGN246
PWLBA6C3 10.1016/j.landurbplan.2010.12.013 https://www.zotero.org/groups/2333075/items/PWLBA6C3
8Z4MIKLB 10.1016/j.marpol.2008.04.002 https://www.zotero.org/groups/2333075/items/8Z4MIKLB
XWPP6FJA 10.1016/j.marpol.2008.04.002 https://www.zotero.org/groups/2333075/items/XWPP6FJA
MW4HLWPR 10.1016/j.marpol.2009.03.001 https://www.zotero.org/groups/2333075/items/MW4HLWPR
KR845GD8 10.1016/j.marpol.2009.03.001 https://www.zotero.org/groups/2333075/items/KR845GD8
ZRAPX6MS 10.1016/j.sbspro.2016.06.109 https://www.zotero.org/groups/2333075/items/ZRAPX6MS
VRDDTMZJ 10.1016/j.sbspro.2016.06.109 https://www.zotero.org/groups/2333075/items/VRDDTMZJ
VHE9YFGF 10.1016/j.scitotenv.2013.02.005 https://www.zotero.org/groups/2333075/items/VHE9YFGF
6IIDBBR5 10.1016/j.scitotenv.2013.02.005 https://www.zotero.org/groups/2333075/items/6IIDBBR5
WAKFU3RS 10.1016/j.tree.2008.06.012 https://www.zotero.org/groups/2333075/items/WAKFU3RS
ARLL3CLN 10.1016/j.tree.2008.06.012 https://www.zotero.org/groups/2333075/items/ARLL3CLN
PU3PHX9Q 10.1016/j.ufug.2013.10.002 https://www.zotero.org/groups/2333075/items/PU3PHX9Q
REYUIQGR 10.1016/j.ufug.2013.10.002 https://www.zotero.org/groups/2333075/items/REYUIQGR
MTCJ5KWS 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/MTCJ5KWS
DGKTDLPR 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/DGKTDLPR
RID99I86 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/RID99I86
AY9NIZQ5 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/AY9NIZQ5
KW689WE9 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/KW689WE9
4LJPPHGV 10.1017/CBO9781107415324.004 https://www.zotero.org/groups/2333075/items/4LJPPHGV
ICCB4TXX 10.1017/s0030605316000417 https://www.zotero.org/groups/2333075/items/ICCB4TXX
D4GX7PA7 10.1017/s0030605316000417 https://www.zotero.org/groups/2333075/items/D4GX7PA7
SUG6PLTI 10.1017/s0376892910000354 https://www.zotero.org/groups/2333075/items/SUG6PLTI
T974PKG5 10.1017/s0376892910000354 https://www.zotero.org/groups/2333075/items/T974PKG5
6EPCCM2L 10.1038/nature09689 https://www.zotero.org/groups/2333075/items/6EPCCM2L
LTWULD6J 10.1038/nature09689 https://www.zotero.org/groups/2333075/items/LTWULD6J
964GWCWL 10.1073/pnas.1011529108 https://www.zotero.org/groups/2333075/items/964GWCWL
S7ZHCY2X 10.1073/pnas.1011529108 https://www.zotero.org/groups/2333075/items/S7ZHCY2X
PUBQELK5 10.1073/pnas.1012681107 https://www.zotero.org/groups/2333075/items/PUBQELK5
UZAVMEMD 10.1073/pnas.1012681107 https://www.zotero.org/groups/2333075/items/UZAVMEMD
JZFTSIGP 10.1073/pnas.1014773107 https://www.zotero.org/groups/2333075/items/JZFTSIGP
I55CAEP2 10.1073/pnas.1014773107 https://www.zotero.org/groups/2333075/items/I55CAEP2
BTB8G6NU 10.1073/pnas.1620503114 https://www.zotero.org/groups/2333075/items/BTB8G6NU
7C3HJVQG 10.1073/pnas.1620503114 https://www.zotero.org/groups/2333075/items/7C3HJVQG
5N7LIL7J 10.1080/08941929809381069 https://www.zotero.org/groups/2333075/items/5N7LIL7J
J2WW7ZZ5 10.1080/08941929809381069 https://www.zotero.org/groups/2333075/items/J2WW7ZZ5
FNYUPRKS 10.1111/cobi.12662 https://www.zotero.org/groups/2333075/items/FNYUPRKS
VPENPZB8 10.1111/cobi.12662 https://www.zotero.org/groups/2333075/items/VPENPZB8
D98ZNPDI 10.1111/conl.12158 https://www.zotero.org/groups/2333075/items/D98ZNPDI
VCTL6AEL 10.1111/conl.12158 https://www.zotero.org/groups/2333075/items/VCTL6AEL
MG6MWBHY 10.1111/j.1461-0248.2009.01387.x https://www.zotero.org/groups/2333075/items/MG6MWBHY
3N7T8C28 10.1111/j.1461-0248.2009.01387.x https://www.zotero.org/groups/2333075/items/3N7T8C28
FCGXLMHZ 10.1111/j.1467-2979.2008.00310.x https://www.zotero.org/groups/2333075/items/FCGXLMHZ
EAFJ2553 10.1111/j.1467-2979.2008.00310.x https://www.zotero.org/groups/2333075/items/EAFJ2553
ZML6CICL 10.1111/j.1467-8373.2004.00247.x https://www.zotero.org/groups/2333075/items/ZML6CICL
F5YV9LXF 10.1111/j.1467-8373.2004.00247.x https://www.zotero.org/groups/2333075/items/F5YV9LXF
EHHDU5B5 10.1111/j.1523-1739.2006.00541.x https://www.zotero.org/groups/2333075/items/EHHDU5B5
PPMQIV4F 10.1111/j.1523-1739.2006.00541.x https://www.zotero.org/groups/2333075/items/PPMQIV4F
SIDBQ636 10.1111/j.1523-1739.2010.01448.x https://www.zotero.org/groups/2333075/items/SIDBQ636
VUVF25FX 10.1111/j.1523-1739.2010.01448.x https://www.zotero.org/groups/2333075/items/VUVF25FX
3XLHYLRU 10.1111/j.1749-6632.2011.06400.x https://www.zotero.org/groups/2333075/items/3XLHYLRU
TYXQ78VM 10.1111/j.1749-6632.2011.06400.x https://www.zotero.org/groups/2333075/items/TYXQ78VM
NWCRFDHM 10.1111/j.1755-263X.2008.00011.x https://www.zotero.org/groups/2333075/items/NWCRFDHM
FT3XLL9C 10.1111/j.1755-263X.2008.00011.x https://www.zotero.org/groups/2333075/items/FT3XLL9C
4NVPISP6 10.1111/j.1755-263X.2008.00011.x https://www.zotero.org/groups/2333075/items/4NVPISP6
H5DE2NLQ 10.1371/journal.pone.0098954 https://www.zotero.org/groups/2333075/items/H5DE2NLQ
PGXNVII7 10.1371/journal.pone.0098954 https://www.zotero.org/groups/2333075/items/PGXNVII7
C9RW6SMA 10.1371/journal.pone.0158350 https://www.zotero.org/groups/2333075/items/C9RW6SMA
AHT3FQ6E 10.1371/journal.pone.0158350 https://www.zotero.org/groups/2333075/items/AHT3FQ6E
F49W22ZY 10.1525/bio.2012.62.1.13 https://www.zotero.org/groups/2333075/items/F49W22ZY
HMZT7A87 10.1525/bio.2012.62.1.13 https://www.zotero.org/groups/2333075/items/HMZT7A87
ITLWYZ6F 10.1525/sp.2007.54.1.23 https://www.zotero.org/groups/2333075/items/ITLWYZ6F
QHPXV4QN 10.1525/sp.2007.54.1.23 https://www.zotero.org/groups/2333075/items/QHPXV4QN
E2EYQM87 10.1556/ComEc.10.2009.1.11 https://www.zotero.org/groups/2333075/items/E2EYQM87
TJU7AV6M 10.1556/ComEc.10.2009.1.11 https://www.zotero.org/groups/2333075/items/TJU7AV6M
9GTVGSMQ 10.1641/0006-3568(2002)052[0143:PCAUDF]2.0.CO;2 https://www.zotero.org/groups/2333075/items/9GTVGSMQ
SPUJNG56 10.1641/0006-3568(2002)052[0143:PCAUDF]2.0.CO;2 https://www.zotero.org/groups/2333075/items/SPUJNG56
AT6BD3D9 10.2192/ursus-d-15-00001.1 https://www.zotero.org/groups/2333075/items/AT6BD3D9
3MPSRLIA 10.2192/ursus-d-15-00001.1 https://www.zotero.org/groups/2333075/items/3MPSRLIA
82SMZCWT 10.2981/0909-6396-14.4.444 https://www.zotero.org/groups/2333075/items/82SMZCWT
NY3BCJEE 10.2981/0909-6396-14.4.444 https://www.zotero.org/groups/2333075/items/NY3BCJEE
IJS4YUXX 10.2984/67.3.1 https://www.zotero.org/groups/2333075/items/IJS4YUXX
75Y368ZT 10.2984/67.3.1 https://www.zotero.org/groups/2333075/items/75Y368ZT
GER8RJG4 10.3197/096734096779522347 https://www.zotero.org/groups/2333075/items/GER8RJG4
N7LHKI6Q 10.3197/096734096779522347 https://www.zotero.org/groups/2333075/items/N7LHKI6Q
L9DKEQBV 10.3390/su4040740 https://www.zotero.org/groups/2333075/items/L9DKEQBV
8HX2GQ5F 10.3390/su4040740 https://www.zotero.org/groups/2333075/items/8HX2GQ5F
8BYAG36L 8 https://www.zotero.org/groups/2333075/items/8BYAG36L
IUKA88PH 8 https://www.zotero.org/groups/2333075/items/IUKA88PH

Non Standard

All DOIs should be given as only the DOI without the resolver, i.e. not starting with http. The following table shows all entries which do have a non-conform DOI:

Show the code
#|

http <- grep("http", bib_data$metrics$zotero_dois$id_raw)
data.frame(
  doi = bib_data$metrics$zotero_dois$id_raw[http],
  link = paste0(bib_data$bibliography$url, "/items/", names(bib_data$metrics$zotero_dois$id_raw)[http])
) |>
  dplyr::mutate(
    doi = paste0('<a href="', link, '" target="_blank">', doi, "</a>"),
    link = NULL
  ) |>
  knitr::kable(
    caption = "DOIs in Zenodo which include a `http`",
    escape = FALSE
  )

Not Valid

Here we do acheck for the structural validity of the dois. This check needs to be improved. Of these 342 are not valid. These are:

Show the code
#|

if (length(bib_data$metrics$zotero_dois$not_valid) > 0) {
  data.frame(
    doi = bib_data$metrics$zotero_dois$not_valid,
    link = paste0(bib_data$bibliography$url, "/items/", names(bib_data$metrics$zotero_dois$not_valid))
  ) |>
    dplyr::mutate(
      doi = paste0('<a href="', link, '" target="_blank">', doi, "</a>"),
      link = NULL
    ) |>
    knitr::kable(
      caption = "DOIs in Zenodo which ar not valid",
      escape = FALSE
    )
} else {
  print("All DOIs in Zenodo are valid.")
}
DOIs in Zenodo which ar not valid
doi
VUA4XP9H 10.1111/j.1365-2664.2008.01565.x
SEB65DQI 10.1111/j.1365-2664.2008.01565.x
R4EFBD4Y 10.1579/0044-7447(2007)36[335:CNWPPC]2.0.CO;2
AI38R843 10.1641/0006-3568(2006)056[0419:rawrlf]2.0.co;2
IUMTLGTR 0109 970401
HFVTHRTJ papers3://publication/uuid/4F260971-0169-4716-AFAA-5F970130A95C
8BYAG36L 8
2IF99VJM DOI: 10.1016/B978-0-12-409548-9.09199-5
P5K35VX6 10.1641/0006-3568(2004)054[0817:DCPOD]2.0.CO;2
7PA224CA 10.2984/1534-6188(2007)61[307:baiopi]2.0.co;2
R4JSYVWA 10.1890/1540-9295(2007)5[475:NCNCAE]2.0.CO;2
6GC3TXVZ 10.1657/1523-0430(2007)39[200:atargi]2.0.co;2
9GTVGSMQ 10.1641/0006-3568(2002)052[0143:PCAUDF]2.0.CO;2
GEKPTB3M 10.1659/0276-4741(2001)021[0260:maithk]2.0.co;2
AMBG6C3X 10.1890/1051-0761(2000)010[0689:BICEGC]2.0.CO;2
TYBUQP5A 10.1175/1520-0442(1999)012<2775:MTTITH>2.0.CO;2
WX75GZJU 10.1659/0276-4741(2006)026[0032:aoalai]2.0.co;2
BJRV5TJ2 10.1890/1540-9295(2006)004[0369:BCITLO]2.0.CO;2
PZ87JRF4 10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
E4YYFVQB www.protectedplanet.net
CEWGBNAV 10.1659/0276-4741(2006)26[245:EASIOI]2.0.CO;2
C9J53DMG 10.2305/IUCN.UK.2015-2.RLTS.T12427A21934884.en Copyright:
DJX84EFR 1092-8987
MRTP8SCV Doi 10.3354/Meps225053
TBMZ8LJP 10.1641/0006-3568(2002)052[0473:SEATFB]2.0.CO;2
2BVPGI9G citeulike-article-id:9333622
C5EXUTBY 10.1641/0006-3568(2004)054[0677:EOIAPO]2.0.CO;2
B4HRHYHZ 10.1657/1523-0430(2003)035[0248:CEOAPB]2.0.CO;2
6Y6KV2V4 Doi 10.1080/13504509.2013.818590
SMNF8FG9 10.1641/0006-3568(2005)055[1041:ooiw]2.0.co;2
N54CXMVT 10.1890/1540-9295(2006)004[0341:ECORUE]2.0.CO;2
ZBHZWBG8 10.1641/0006-3568(2006)56[733:LKOSAI]2.0.CO;2
MPJ4QM4E VOL.5 / N°1
QYKLKFIY 10.1577/1548-8659(2003)132<0371:MSIFES>2.0.CO;2
IUKA88PH 8
7TYHAKQZ 10
ZXJB2QLB 16
ZLUTMLIZ 12
RKTCHW4Z 10.1890/1051-0761(1997)007[0642:BHTBAS]2.0.CO;2
SPUJNG56 10.1641/0006-3568(2002)052[0143:PCAUDF]2.0.CO;2
FYGD386V 10.1641/0006-3568(2002)052[0917:PSIAAT]2.0.CO;2
K2M8UL9I 10.1890/1540-9295(2006)004[0238:EVOTPC]2.0.CO;2
SS2A2LPS http://www.un.org/ga/president/62/ThematicDebates/ccact/vulnbackgrounder1July.pdf
PKP7UTRT Policy Matters
QMFIV74K 978 92 9115 193 6
ENVZKGP3 10.1579/0044-7447(2007)36[639:CHANS]2.0.CO;2

Not in OpenAlex

To validate the existence and validity of the DOIs, we check if the DOIs are in the OpenAlex database.

Of the 1872 unique DOIs in the library, 342 (18.27%) are in not in OpenAlex. This includes the non-valid DOIS, which are filtered out in the table below.

Show the code
data.frame(
  doi = bib_data$metrics$zotero_dois$not_in_oa,
  link = paste0(bib_data$bibliography$url, "/items/", names(bib_data$metrics$zotero_dois$not_in_oa))
) |>
  dplyr::mutate(
    doi = paste0('<a href="', link, '" target="_blank">', doi, "</a>"),
    link = NULL
  ) |>
  knitr::kable(
    caption = "DOIs in Zenodo which ar not in [OpenAlex](https://OpenAlex.org){target='_blank'}",
    escape = FALSE
  )
DOIs in Zenodo which ar not in OpenAlex
doi
45DD6I9W 10.1007/BF01907290
KN6T2626 10.1111/j.1523-1739.2006.00291.x
AFJQEHMM 10.1016/S0964-5691(97)00013-6
NCEBSK4P 10.1016/S0308-597X(03)00083-6
V9ICSHDJ 10.1016/0308-597X(89)90004-3
KTXQLK27 10.1007/BF03325996
288J95UP 10.3152/146155108X333271
9F8BQ32R 10.1016/S0964-5691(98)00017-9
JLXQJNZQ 10.5751/ES-06602-190308
SNTIRLL9 10.5751/ES-02427-130125
V4QH4EM8 10.1007/BF00140235
SXW3HQXD 10.1071/PC140206
RUWBPF98 10.1071/PC110192
AF9PZDQF 10.1023/B:AGFO.0000049433.95038.25
XNDHZ9CH 10.1111/j.1755-263X.2012.00243.x
QSK24IFJ 10.5829/idosi.wjz.2012.7.4.6634
WGJUHCYT 10.1017/S0014479709991049
8FGVRBC8 10.1016/S0921-8009(97)00587-9
NWCRFDHM 10.1111/j.1755-263X.2008.00011.x
SJ7UKFRZ 10.1016/S0964-5691(98)00042-8
RQVSNJSN 10.1016/0308-597X(96)00028-0
4AULLFEM 10.1016/0308-597X(96)00028-0
4F92MHHH 10.1016/S0964-5691(02)00111-4
9N6AFV4F 10.1016/S0964-5691(98)00042-8
GHH7RJP9 10.1016/S0964-5691(02)00111-4
56F45D42 10.1017/S0376892910000354
6MP9FEXG 10.1016/S0964-5691(02)00111-4
YXMT3NI4 10.1016/S0964-5691(98)00042-8
HTD2TL3Y 10.1016/S0308-597X(02)00086-6
GV9MT7GA 10.1007/BF00133748
DDLCA99W 10.1007/BF00052720
DTDLMWI8 10.1007/BF00133748
YQKKS7MK 10.1007/BF00052720
Q533UEYD 10.1007/BF00133748
M7MLPRI3 10.1007/BF00133748
GTULGPMW 10.1007/BF00052720
JL49HCDD 10.1016/S0169-5347(98)01384-6
K6SH42IP 10.1017/S0376892910000172
FT3XLL9C 10.1111/j.1755-263X.2008.00011.x
WREPK2JP 10.1016/S0305-750X(98)00141-7
MTCJ5KWS 10.1017/CBO9781107415324.004
V3KN8Z3R 10.1016/J.WORLDDEV.2014.01.020
TWBFJG24 10.1016/S0954-349X(01)00029-7
Q8WDZJ7N 10.1525/sp.2007.54.1.23.
C9VR639F 10.1016/J.WORLDDEV.2004.07.009
J98ZTEYD 10.1071/RJ15047
CLE5T3XR 10.1017/S003060531200172X
VUA4XP9H 10.1111/j.1365-2664.2008.01565.x
SEB65DQI 10.1111/j.1365-2664.2008.01565.x
CB444RB6 10.1644/10-MAMM-A-036.1
TR8D7SD8 10.1016/S0140-1963(02)90975-4
EDAYLLIY 10.1029/2006GL028364
MWJ539W4 10.1016/J.DSR2.2014.10.027
R4EFBD4Y 10.1579/0044-7447(2007)36[335:CNWPPC]2.0.CO;2
R98F6CEH 10.1007/BF00298083
B65MUXZH 10.1007/BF01787452
AI38R843 10.1641/0006-3568(2006)056[0419:rawrlf]2.0.co;2
5J4MF6PP 10.1016/J.MARPOL.2007.01.001
KM3BSBH2 10.1016/J.JAS.2009.06.030
KK3GK4UI 10.1016/J.FISHRES.2009.08.011
RULE8IGR 10.1016/J.MARPOLBUL.2009.04.024
JSWLUAV9 10.1016/J.TREE.2004.09.006
JDL6AFB6 10.1023/B:RFBF.0000033122.90679.97
Y4DXLWNF 10.1890/13-2182.1.sm
AG7P56TU 10.1007/BF00300972
FJ8S83FP 10.1016/S0160-7383(98)00104-2
BBUW3QD2 10.5751/ES-08384-210212
IUMTLGTR 0109 970401
4BNWMM6L 10.6119/JMST-016-0713-1
RCPFGQ99 10.1016/J.ECSS.2006.12.019
DGKTDLPR 10.1017/CBO9781107415324.004
PBNCDNDE 10.1016/S0921-8009(99)00092-0
HFVTHRTJ papers3://publication/uuid/4F260971-0169-4716-AFAA-5F970130A95C
XBL7QFCE 10.1016/J.TECHFORE.2016.06.009
Y3XTDC7U 10.5751/ES-07168-190453
48U5EJQB 10.1017/S0376892902000231
3N2WS284 10.1017/S135577x07003592
8BYAG36L 8
9INR2VDR 10.1016/S0016-3287(03)00156-3
8PZ33NXT 10.5751/ES-06527-200112
ILSTHV6X 10.1073/PNAS
RID99I86 10.1017/CBO9781107415324.004
8WWMLD9S 10.1146/annurev.ecolsys.l
BQCAJLI7 10.5751/ES-06283-190141
2I7YJ5JF 10.1046/j.1466-822X.2001.00256.x
5YPUDSI4 10.1023/B:LAND.0000018370.57457.58
5A5MLU6W 10.1046/j.1466-822X.2003.00042.x/pdf
2HFLPVN8 10.1029/2009WR008929
AY9NIZQ5 10.1017/CBO9781107415324.004
IWNB3A4H 10.1659/MRD-JOURNAL-D-09-00084.1
H8WEYQKF 10.1016/S0954-349X(01)00029-7
2IF99VJM DOI: 10.1016/B978-0-12-409548-9.09199-5
RZAHQHDW 10.1038/nature01309.1.
CVHXRGNK 10.1016/0167-8809(92)90107-M
TXTNG9AK 10.1007/BF02819384
Q7RSI52K 10.1023/B:JICO.0000027504.92727.ab
NBPWCBVQ 10.1016/S0022-0981(02)00495-1
5YD3WLCT 10.1175/2011JCLI3932.1
CAG5NR5B 10.1016/S0264-2751(00)00007-X
GKX7ANN5 10.1016/S1352-2310(03)00197-3
Q32YITHD 10.1071/MF09315
46KAWQSF 10.1016/S0140-6736(12)60560-1
P5K35VX6 10.1641/0006-3568(2004)054[0817:DCPOD]2.0.CO;2
7PA224CA 10.2984/1534-6188(2007)61[307:baiopi]2.0.co;2
R4JSYVWA 10.1890/1540-9295(2007)5[475:NCNCAE]2.0.CO;2
NYIWXZXW 10.1016/j.ejrh.2014.07.001
8KZ8L4D7 10.1890/ES14-00534.1
6E63FVYA 10.1016/0025-326X(93)90025-F
BDYZ5QG4 10.1017/CBO9781107415324.024
TIC96QUE 10.1017/S037689290200005X
7HWDT9BK 10.1029/2012GL053032
SWYDJ76U 10.1016/0305-750X(91)90133-3
6GC3TXVZ 10.1657/1523-0430(2007)39[200:atargi]2.0.co;2
NFPEESN5 10.1029/2010JD013819
YSQX5UHD 10.1017/CBO9781107415324.023
9GTVGSMQ 10.1641/0006-3568(2002)052[0143:PCAUDF]2.0.CO;2
3F2DNINE 10.1016/S0959-3780(01)00007-3
X7MY36HU 10.3724/SP.J.1145.2010.00301
EL7WLJUK 10.1016/S0140-6736(11)61337-8
UY3TVM29 10.1029/2005GL023684
S5CL92T6 10.1016/S0308-597X(03)00041-1
8I2UIVAQ 10.1162/ASEP_a_00156
IPNVM8WN 10.2307/annurev.ecolsys.37.091305.30000024
RSHTVG3J 10.1023/A:1021107026067
GEKPTB3M 10.1659/0276-4741(2001)021[0260:maithk]2.0.co;2
SUNMVSNK 10.5751/ES-01264-100123
AMBG6C3X 10.1890/1051-0761(2000)010[0689:BICEGC]2.0.CO;2
JA3T4Q8N 10.1016/S0006-3207(02)00039-3
KW689WE9 10.1017/CBO9781107415324.004
CF99U7S2 10.1016/S1001-0742(12)60242-3
TYBUQP5A 10.1175/1520-0442(1999)012<2775:MTTITH>2.0.CO;2
WX75GZJU 10.1659/0276-4741(2006)026[0032:aoalai]2.0.co;2
RCYPNDZU 10.1016/S0169-2046(00)00136-5
8E6ARZGK 10.5897/AJAR11.1726
TJF56FE9 10.1007/BF00138852
HAPCGXKK 10.1023/A:1023697714517
28N8KN2X 10.1111/j.1365-2427.2010.02420.x
4LJPPHGV 10.1017/CBO9781107415324.004
Z95TJ4FY 10.1071/PC110201
BJRV5TJ2 10.1890/1540-9295(2006)004[0369:BCITLO]2.0.CO;2
PZ87JRF4 10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
33TEG77J 10.1016/J.FCR.2012.02.022
88XHG2SP 10.1017/S0030605315000691
KYQPYBHC 10.16373/j.cnki.ahr.140062
T6BQ6HVQ 10.1016/J.GLOENVCHA.2004.01.001
P3MMH3EL 10.1071/MF09065
HEMI8NQB 10.1016/j.marpol.2017.01.006
LBVMHIXU 10.1016/S0308-521X(01)00034-8
NCPI4DUP 10.1016/J.AGEE.2007.01.019
ZDMIGPMF 10.1016/j.tplants.2012.04.001.
52C2WLNC 10.1016/J.CUB.2017.09.047
HU95HIRY 10.1023/A:1021055926316
BUSPMPS3 10.1016/S0065-2113(01)74033-3
XPFUXK8J 10.1016/J.BIOCON.2014.01.030
5DPE6THP 10.1016/J.RSE.2016.02.010
IRTYBNKW 10.1016/J.ENVRES.2016.09.001
4PZJPVQU 10.1016/J.FORECO.2016.04.054
ACQ855CL 10.1016/J.RAMA.2015.05.007
E4YYFVQB www.protectedplanet.net
43IR3HRJ 10.1016/J.ECOLMODEL.2016.03.009
RNBCJ5VA 10.1023/A:1024835721316
3RZ5HHDH 10.1300/J091v18n04
II2A4XVL 10.2305/IUCN.UK.2012.RLTS.T5671A3048087.en
CEWGBNAV 10.1659/0276-4741(2006)26[245:EASIOI]2.0.CO;2
XVEN6ZG2 10.1017/S0376892903000225
9TZ5SDSS 10.1017/S1464793105006950
4E9YLVQ8 10.1017/S0376892900034883
E2EYQM87 10.1556/ComEc.10.2009.1.11
ZFPKB7KW 10.4172/2161-1173.1000e121
ZA2NQTR4 10.1016/S0967-0645(97)00082-9
FVAJEBGE 10.1071/MU10024
YY8CHUDI 10.1002/aqc
YIBWV87N 10.1659/MRD-JOURNAL-D-09-00040.1
TUSGZW98 10.5751/ES-06803-190408
F9XQ7RXJ 10.1016/S0304-3770(99)00080-7
8Y3LTDDL 10.4238/2015.March.20.8
B7SEPP2X 10.1017/S0030605300012928
UWJFKVHD 10.1071/WR9880009
C9J53DMG 10.2305/IUCN.UK.2015-2.RLTS.T12427A21934884.en Copyright:
KAWUD6M3 10.1590/S0044-59672011000400017
R366V7B6 10.1016/S0006-3207(03)00016-8
KZKYPU4W 10.1016/J.MARPOL.2010.09.004
DA3J568M 10.1017/S0959270910000316
H853BZX7 10.1016/J.CJ.2014.06.006
DJX84EFR 1092-8987
MRTP8SCV Doi 10.3354/Meps225053
SEBMYXBB 10.1659/MRD-JOURNAL-D-09-00091.1
7ENJE2XP 10.1016/J.GLOENVCHA.2015.02.009
UXP337GV 10.1017/CBO9781139627085
BV34WD6V 10.1071/RJ09058
TBMZ8LJP 10.1641/0006-3568(2002)052[0473:SEATFB]2.0.CO;2
TJU7AV6M 10.1556/ComEc.10.2009.1.11
5HWKFHSD 10.1505/ifor.10.2.292
SHZVALNC 10.1023/A:1016060808831
VTQVIKRP 10.1017/S0376892910000561
BNHWU4RL 10.1017/S0030605305000724
78CZZ5S8 10.1023/A:1024161409110
AFFTH8GT 10.1071/RJ14094
V96E2KXI 10.1016/B978-0-12-381015-1.00001-0
9RNCF4HS 10.1038/NCLIMATE2277
N4REKPQH 10.1071/MF12306
VAHVNGAJ 10.1017/S0269727000008988
LLI3S9EV 10.1017/S0376892900038212
3QJVSDHQ 10.1016/J.CUB.2014.03.011
XAUZ7WLZ 10.1071/AM16009
EUK96H5D 10.1007/BF02233860
MKKQED7A 10.1007/BF02908720
DK6J4ABY 10.1017/S0266467416000353
LJLUV9K5 10.1023/A:1011315214598
G278UJUJ 10.1007/BF00707463
QITI6L4Q 10.1016/B978-0-08-047514-1.50012-3
V9588STI 10.3097/LO.200701
2BVPGI9G citeulike-article-id:9333622
FZZ78UV6 10.1023/A:1012047602192
C5EXUTBY 10.1641/0006-3568(2004)054[0677:EOIAPO]2.0.CO;2
4V9ZBFQI 10.1016/S0169-5347(00)89171-5
FQMYTMW9 10.1017/S0026749X12000443
4FCVFCFI 10.1051/agro
B4HRHYHZ 10.1657/1523-0430(2003)035[0248:CEOAPB]2.0.CO;2
PECXAWI8 10.1016/0025-326X(92)90224-T
25NN5F3N 10.1071/BT06178
KJGV2VNH 10.1016/S0169-2046(99)00069-9
5I7P2W7K 10.1016/J.PLD.2017.05.005
T89BNVIP 10.5716/WP14064.PDF
KND6YTJ8 10.1071/MA16043
5KNBMEC6 10.1016/J.GLOENVCHA.2011.10.009
GFZ72MZQ 10.1029/2010GL046474
QIMHYTVJ 10.1017/S1464793102006061
FHVKU3C7 10.1111/j.1365-2664.2007.0
3EI4ZTJ3 10.1071/WF03015
6Y6KV2V4 Doi 10.1080/13504509.2013.818590
8NAHD57M 10.1023/A:1008804029850
SMNF8FG9 10.1641/0006-3568(2005)055[1041:ooiw]2.0.co;2
6TQWJDP6 10.1016/S0006-3207(98)00025-1
UZ63T897 10.1017/S0376892906002748
XT9SV8ZM 10.1071/MF16322
E5G3I92U 10.1017/S0376892902000085
P28XTZ7V 10.1023/B:AGFO.0000028995.13227.ca
AC2TK7SY 10.1016/J.GLOPLACHA.2014.10.012
N54CXMVT 10.1890/1540-9295(2006)004[0341:ECORUE]2.0.CO;2
FJJKCDUF 10.1023/A
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TODO Do Exist

TODO Finally we check, if these dois exist but are not ingested into OpenAlex. This is done using the doi.org resolver This is disabled at the moment and still needs to be implemented.

Reuse

Citation

BibTeX citation:
@report{krug,
  author = {Krug, Rainer M.},
  title = {Bibliography {Report}},
  langid = {en},
  abstract = {Reports analysing the IPBES Libraries on Zotero.}
}
For attribution, please cite this work as:
Krug, Rainer M. n.d. “Bibliography Report.”